PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g13270.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 182aa    MW: 19949.3 Da    PI: 6.3549
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g13270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-10346445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT eE  ++ da + +G++   +W  +a+ +g g++ +++k ++q
  Vradi05g13270.1  3 WTREENRRFEDALAVHGPDdpnRWQHVANAVG-GKSVEEVKMHYQ 46
                     *****************99*************.***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.874153IPR017884SANT domain
SuperFamilySSF466893.14E-12356IPR009057Homeodomain-like
SMARTSM007179.9E-6351IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-5349IPR009057Homeodomain-like
CDDcd001671.03E-8346No hitNo description
PfamPF002491.9E-8346IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGWTREENRR FEDALAVHGP DDPNRWQHVA NAVGGKSVEE VKMHYQILQE DVIRIEHDQI  60
PLPRYRGAGI NGRQIDNEQR DISPLLKSPA NEESDSPMKH FGVGKGIRGN GEDIISFGVF  120
GGVGSAIPCG FGPGRLEGSL ESGRALPRRI GPGPESYRWG RGPECYGWGL GPRCCGEQYI  180
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-193821190RADIALIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g13270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-124AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153651012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-25RAD-like 6