PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi05g13620.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 317aa MW: 34399.1 Da PI: 7.6065

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g13620.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	210.3	4.7e-65	113	254	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 s +++CqdCGnqakkdC+h RCRtCCk+rgf+C+thvkstWvpaakrrerqqqlaa+++ ++ + e+ +kr ++ +++ +s ++ Vradi05g13620.1 113 SSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERQQQLAALQNPQQF-RPENIPKRYHR---------DTQLVSAPQP 196 5689*************************************************99666544.33444444333.........2334455566 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le ++P+evs++avfrcvrvs+vd ++e++aYqt+v+igGhvfkGiLydqG+e+ Vradi05g13620.1 197 IAGLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPES 254 778999************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.2E-62	115	253	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.6E-26	117	159	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.3E-25	204	252	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAGFFSLGGT RRGGPQNKEE GEVEKGDNNI NNNNGNNLLL FRNEEIYNKG FEIWPESYQP 60 QAAPQNLSNY FAFGVGPSRR NCSSVNEEEV SLCVSDESTR FGLTVMRSGG AGSSGMNCQD 120 CGNQAKKDCT HLRCRTCCKT RGFQCQTHVK STWVPAAKRR ERQQQLAALQ NPQQFRPENI 180 PKRYHRDTQL VSAPQPIAGL ELGHFPPEVS TSAVFRCVRV SAVDASDEQC AYQTSVNIGG 240 HVFKGILYDQ GPESSYTSAA TEGSSGGEPR QLGLMTAAAT ATATTVSGNN PFEPSLYPAS 300 LNAFMSGTQF FQPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g13620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014500767.1	0.0	protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	3e-82	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A1S3U423	0.0	A0A1S3U423_VIGRR; protein SHI RELATED SEQUENCE 5
STRING	XP_007136048.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-66	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]