PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g13720.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BBR-BPC
Protein Properties Length: 338aa    MW: 37375.4 Da    PI: 9.9562
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g13720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind408.86.8e-12513371301
        GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllv 87 
                      mdd g+re  r+k+ +y++a  + l +++   +q+m+++aerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erdn++++l+++
  Vradi05g13720.1   1 MDDAGHREngRHKAdQYKSAqgQWLMQHQpsMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYR 94 
                      9*****999*****9***655544444432146************************************************************* PP

        GAGA_bind  88 ensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseksk 175
                      e+s+      ++p+g+q+++g+k+i++ qq +++ p+++d+++ +re+++++alp+      ++e+ k+   +rak+pke+k+++++kk++k  
  Vradi05g13720.1  95 ETSIGsgsmPSCPPGCQISRGVKHIHHPQQqVHHiPNMGDPSYSTREMHTTDALPTAP---ITSEAGKS---RRAKRPKEPKSTSPNKKTPKAA 182
                      **987787789*****************9955669******************99544...44444433...4778999999999999999999 PP

        GAGA_bind 176 kkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiS 240
                      kkvkkes+d +                             ska++k +dl+ln+v++Dest+P+PvCsCtG+l+qCYkWGnGGWqSaCCttt+S
  Vradi05g13720.1 183 KKVKKESEDLNkvmfgkahewkngqemvnggddlnkqlvvSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLKQCYKWGNGGWQSACCTTTLS 276
                      *******995559********************************************************************************* PP

        GAGA_bind 241 vyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      +yPLP+++++r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+
  Vradi05g13720.1 277 MYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 337
                      ************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.6E-1771337IPR010409GAGA-binding transcriptional activator
PfamPF062176.7E-1081337IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDDAGHRENG RHKADQYKSA QGQWLMQHQP SMKQIMAIMA ERDAAIQERN LAISEKKAAY  60
AERDMAFLQR DAAIAERNNA ILERDNAIAT LQYRETSIGS GSMPSCPPGC QISRGVKHIH  120
HPQQQVHHIP NMGDPSYSTR EMHTTDALPT APITSEAGKS RRAKRPKEPK STSPNKKTPK  180
AAKKVKKESE DLNKVMFGKA HEWKNGQEMV NGGDDLNKQL VVSKADWKGQ DLGLNQVAYD  240
ESTMPAPVCS CTGVLKQCYK WGNGGWQSAC CTTTLSMYPL PAVPNKRHAR VGGRKMSGSA  300
FNKLLSRLAA EGHDLSNPVD LKDHWAKHGT NRYITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g13720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014501778.10.0protein BASIC PENTACYSTEINE6
RefseqXP_014501779.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-163BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A1S3U7230.0A0A1S3U723_VIGRR; protein BASIC PENTACYSTEINE6
STRINGGLYMA04G02860.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-153basic pentacysteine 6