PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi05g15570.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 220aa MW: 24175 Da PI: 7.678

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g15570.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.8	4.4e-12	14	53	1	40
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c Vradi05g15570.1 14 KGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSC 53 79****************************99***9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-21	5	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.95E-14	9	83	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.753	9	77	IPR017930	Myb domain
SMART	SM00717	5.5E-13	13	75	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-13	14	72	IPR001005	SANT/Myb domain
CDD	cd00167	1.45E-12	16	73	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCPGRLPGR 60 TDNEIKNYWN THIRRKLLSR GIDPATHRPL NDSPRHNQVQ ESAGAATITF APKQEENDNN 120 VLLEVKDSKS PTSERCPDLN LELSISPPHH EREEGGDEEE SKSIGRSLCF ACSLGLQNSK 180 DCSCALNAIT ANANASTATG YDFLGLKTNP LDYRTLQMK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g15570.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014499816.1	1e-144	myb-related protein 308
Swissprot	P81393	2e-76	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A1S3U1C6	1e-143	A0A1S3U1C6_VIGRR; myb-related protein 308
STRING	XP_007137351.1	1e-122	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-66	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]