PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g16150.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 191aa    MW: 21806.6 Da    PI: 9.9152
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g16150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-133692155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GV++++++gr++A+++d  s+n+ ++k+ + g ++ ++ Aa+a++ a++k++g
  Vradi05g16150.1 36 SPYRGVTRHRWTGRYEAHLWDkTSWNQaQNKKGRQGAYDDEDAAARAYDLAALKYWG 92
                     68*******************77779999988888*****99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-1536102IPR016177DNA-binding domain
PROSITE profilePS5103218.41337100IPR001471AP2/ERF domain
SMARTSM003805.9E-2037106IPR001471AP2/ERF domain
PRINTSPR003672.7E-63849IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1238101IPR001471AP2/ERF domain
PfamPF008471.5E-83892IPR001471AP2/ERF domain
PRINTSPR003672.7E-682102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAAKTSHKTL CVDSPMLKKK RPRKTIPRDT PLPRTSPYRG VTRHRWTGRY EAHLWDKTSW  60
NQAQNKKGRQ GAYDDEDAAA RAYDLAALKY WGPETLLNFP VSNYEEQLKE MEDQSKEEYI  120
GSLRRKSSGF SRGVSKFRGV ARWEARIGRV FGNKYLYLGT YAGIYTDTDD IIFGDLTSIA  180
SPIFHCDLNA *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g16150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150406e-65AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500296.11e-101AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN44e-70AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S3U2Q81e-100A0A1S3U2Q8_VIGRR; AP2-like ethylene-responsive transcription factor At1g16060
STRINGSolyc12g010490.1.13e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.27e-68AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]