PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g16320.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 305aa    MW: 33835.8 Da    PI: 8.2164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g16320.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11128174455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++  +f  L + +P +     kK++Ka +L++A++Y+k+L+
  Vradi05g16320.1 128 DHIMSERKRRQELTRKFIALASTIPGL-----KKMDKAHVLREAINYVKQLK 174
                      6999***********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.104124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-16128191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.91E-11129178No hitNo description
PfamPF000103.4E-9129173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15129186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-12130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSSYDSGMWP GTVITKPFDE EFLRDILQQP QEGAATGLNS FGETSCVVRA AGGDKLMMKN  60
SNSSMVNLCG ENKNKATTSP TTYVLSFDKS DDPHSVSAWK DVSHNLPLSS TRTNQGTRKT  120
RSASESMDHI MSERKRRQEL TRKFIALAST IPGLKKMDKA HVLREAINYV KQLKERVEVL  180
EEDIQKNGAE SSITITRSHL CIDDTNSDEW YGSNEAVPAE VEARVLGKQM LIKIHCGKQK  240
GILLKILSQL ERLHLLISTS NVLPLGSTID ITIIAQMGDE YKMVVKDLVK ELRQVAMMKS  300
CVSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g16320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022636889.10.0transcription factor bHLH18
TrEMBLA0A0S3SFC90.0A0A0S3SFC9_PHAAN; Uncharacterized protein
STRINGXP_007150796.11e-138(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15398711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.24e-46bHLH family protein