PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g16330.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 194aa    MW: 22127.1 Da    PI: 4.7554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g16330.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.0007446623854
                     STCHHHHHHHHHHHHHH CS
              HLH 38 lsKaeiLekAveYIksL 54
                      +K++iL +A++Y+k+L
  Vradi05g16330.1 46 TDKSSILGEAINYVKEL 62
                     68*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.1E-74581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-54680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MLEECHIQEE EFLREILGEP GFSSETETHH HNNFTTPTDA HTLTMTDKSS ILGEAINYVK  60
ELKERVTELE ERNKRGKESV TILKKSDVCE SSERDSKDWC RMLPDIEARV MENEVLIEIH  120
CEKEEGVELK LLDHLENLHL CVTATSVLPF GNSTLGITII AQMGDAYKMT VNDVVKNLRK  180
VFMNHMNIHG DPY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g16330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-172AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502122.11e-104transcription factor bHLH18 isoform X1
TrEMBLA0A1S3U7W91e-103A0A1S3U7W9_VIGRR; transcription factor bHLH18 isoform X1
STRINGXP_007150795.12e-80(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-22bHLH family protein