PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi05g17260.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 208aa MW: 22039.2 Da PI: 9.034

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g17260.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	83.5	5.3e-26	54	100	11	57
DUF702 11 CGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqla 57 CGn+akkdC ++RCRtCCk rg+dC+thvkstWvp+ +rrer a Vradi05g17260.1 54 CGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRREREMVVA 100 ******************************************76554 PP
2	DUF702	68.3	2.5e-21	113	164	102	153
DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++slP +v+++avf+c rvs++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++ Vradi05g17260.1 113 KQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVD 164 467***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01623	6.9E-24	54	92	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	7.7E-23	54	97	IPR007818	Protein of unknown function DUF702
Pfam	PF05142	3.1E-20	112	164	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	4.0E-24	116	163	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MLGLRDLVLI AQTPSLHQGQ PISENQTPNL PLPSSAALSV GFGIFPLLTA TPYCGNRAKK 60 DCIFRRCRTC CKGRGYDCST HVKSTWVPSI RRREREMVVA PAGGVGGGNA SFKQSLPGHV 120 RAPAVFKCHR VSAIGNGEDE FAYLATVHIS GHVFKGFLYD HGVDGKIANA VPCVSELQLG 180 NNCSGKNREC SSAIGLPNNN AYPASAT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g17260.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-154	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027343077.1	1e-97	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	5e-38	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A371E4K6	1e-101	A0A371E4K6_MUCPR; Protein LATERAL ROOT PRIMORDIUM 1 (Fragment)
STRING	XP_007148931.1	1e-90	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	4e-40	SHI-related sequence 6

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]