PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g17640.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 844aa    MW: 95116.6 Da    PI: 6.4759
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g17640.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.11.2e-105234142349
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA++v+sg+ ++a+  L+ +s+++spdg+++qR+++yf eAL +r+ ++ +++yk+++ps+ts   ss+ + a k+f+e++P+lkfs+
  Vradi05g17640.1  23 ISLLIDCAKCVASGSIKNADIGLEYISQISSPDGNAVQRMVSYFSEALGHRIIKHLPGVYKSISPSKTS--LSSDDILAEKYFYELCPFLKFSY 114
                      579************************************************************999998..79********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      l++NqaI+ea+e e  vHiiD+   +++QW+ Ll ++ +R++ pp+l+iTg+++    ske l +++   ++ A + + p++f + ++++led+
  Vradi05g17640.1 115 LITNQAIVEAMECEMVVHIIDLHCCEPAQWIDLLLTFKNRRGRPPHLKITGINE----SKEVLDQVNFHVTSEAGKYDFPLQFYP-IVSKLEDV 203
                      ******************************************************....***************************.7999**** PP

             GRAS 190 eleeLrvkpgEalaVnlvlqlhrll........................................................desvsleserdev 227
                      ++e+L vk+g+a+a+ +vlqlh ll                                                          s +      ++
  Vradi05g17640.1 204 DFEKLPVKTGDAVAITSVLQLHLLLstdddvagrispavaasmnlqrtvhmgqrtfaewlerdminayilspdsalsplsfGASPK----MGNL 293
                      ************************************************************************99988755544444....555* PP

             GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                      Lk++++l+Pk+vvv+eqe+++n+++++er+ +al++ysalfd+l++++ r+s er+k+Er l+g++i+n++aceg er+erhe+lekW +rle+
  Vradi05g17640.1 294 LKAMRKLNPKLVVVTEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMRTSVERQKLERTLFGEQIKNIIACEGVERKERHEKLEKWIRRLEM 387
                      ********************************************************************************************** PP

             GRAS 322 aGFkpvplsekaakqaklllrkvksdgy 349
                      aGF +vpls++   +ak ll++++s  y
  Vradi05g17640.1 388 AGFVKVPLSYNGRIEAKNLLQRYNSP-Y 414
                      ***********************965.5 PP
2GRAS317.72.4e-974318343374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L +cA++++sg+  +a++ L  + ++asp gd+mqR+a+y+ e+La +++++ +++ ka++ s+t   ++see  + k+f+++ P+lk +++
  Vradi05g17640.1 431 RILNACAKFIESGSIMNADTGLDYIAHIASPFGDAMQRVATYVSEGLAFQVLKNLQGVPKAVNLSKTM--STSEEQLVKKTFYDLYPFLKTAYV 522
                      7899**********************************************************999987..577888899*************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      ++ +aI eavegee +H+iD+ +s  +QW+ L++ L +  ++p  l+iTg+++    +ke le++  +L+  A+ l+ ++efn+ ++++le+++
  Vradi05g17640.1 523 ITSHAIAEAVEGEEVIHVIDLCASDAAQWVYLMHRLKENLKSPSLLKITGIHE----KKEILEQVDTQLRVEAKCLNFKLEFNA-IVSTLENVD 611
                      *****************************************************....9**************************.79******* PP

             GRAS 191 leeLrvkpgEalaVnlvlqlhrll.............................................desvsleserdevLklvkslsPkvv 239
                      leeL v++gE la+++vlqlh+ll                                             + ++++ +    +Lk +++l+P+v+
  Vradi05g17640.1 612 LEELPVQKGEPLAISSVLQLHTLLatddavvcnrsskeepmhqrtfaemlgkqktnlssessliqlslcATPTKMMD----FLKGLWKLQPRVM 701
                      **************************************************************998665555555555....************* PP

             GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                      vv+eqe++ n +s+ er+ +al++y alf++le++++++  +r+ +Er llg+ei+n+va eg er+erhe+le+W  +le+aGF++ ++s++ 
  Vradi05g17640.1 702 VVTEQESSAN-GSLTERVDKALDFYGALFNCLESTVSTTLVQRNIMERTLLGQEIKNIVAGEGVERKERHEKLETWIPKLEMAGFGKRHISHHG 794
                      *******996.689******************************************************************************** PP

             GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       +qa+  l+ ++ +gy++  e++sl+ +W+d+pL+svSaW+
  Vradi05g17640.1 795 IMQARKQLHDYG-NGYKLCPENNSLFVCWNDKPLFSVSAWT 834
                      ************.9**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.6871420IPR005202Transcription factor GRAS
PfamPF035144.1E-10323414IPR005202Transcription factor GRAS
PROSITE profilePS5098540.009429815IPR005202Transcription factor GRAS
PfamPF035148.3E-95431834IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MDSGSPCQWL RELRLESQGL NPISLLIDCA KCVASGSIKN ADIGLEYISQ ISSPDGNAVQ  60
RMVSYFSEAL GHRIIKHLPG VYKSISPSKT SLSSDDILAE KYFYELCPFL KFSYLITNQA  120
IVEAMECEMV VHIIDLHCCE PAQWIDLLLT FKNRRGRPPH LKITGINESK EVLDQVNFHV  180
TSEAGKYDFP LQFYPIVSKL EDVDFEKLPV KTGDAVAITS VLQLHLLLST DDDVAGRISP  240
AVAASMNLQR TVHMGQRTFA EWLERDMINA YILSPDSALS PLSFGASPKM GNLLKAMRKL  300
NPKLVVVTEQ ESNLNGSNLM ERVDRALYFY SALFDCLDST VMRTSVERQK LERTLFGEQI  360
KNIIACEGVE RKERHEKLEK WIRRLEMAGF VKVPLSYNGR IEAKNLLQRY NSPYPWLKDM  420
NGEDRDEYLA RILNACAKFI ESGSIMNADT GLDYIAHIAS PFGDAMQRVA TYVSEGLAFQ  480
VLKNLQGVPK AVNLSKTMST SEEQLVKKTF YDLYPFLKTA YVITSHAIAE AVEGEEVIHV  540
IDLCASDAAQ WVYLMHRLKE NLKSPSLLKI TGIHEKKEIL EQVDTQLRVE AKCLNFKLEF  600
NAIVSTLENV DLEELPVQKG EPLAISSVLQ LHTLLATDDA VVCNRSSKEE PMHQRTFAEM  660
LGKQKTNLSS ESSLIQLSLC ATPTKMMDFL KGLWKLQPRV MVVTEQESSA NGSLTERVDK  720
ALDFYGALFN CLESTVSTTL VQRNIMERTL LGQEIKNIVA GEGVERKERH EKLETWIPKL  780
EMAGFGKRHI SHHGIMQARK QLHDYGNGYK LCPENNSLFV CWNDKPLFSV SAWTVQKMNN  840
MVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-4758341378Protein SCARECROW
5b3h_D9e-4758341378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g17640.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499457.10.0scarecrow-like protein 3
TrEMBLA0A1S3U0B50.0A0A1S3U0B5_VIGRR; scarecrow-like protein 3
STRINGXP_007149008.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-124scarecrow-like 3