PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi05g18820.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 114aa MW: 12731.7 Da PI: 9.3324

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g18820.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.9	5.2e-36	13	86	1	74
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +CaaCk+lrr+C++dCv+apyfpa++p+kf vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPv Vradi05g18820.1 13 PCAACKLLRRRCTRDCVFAPYFPAHEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVL 86 7***********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.488	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-35	13	86	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MKESGRKQGT MSPCAACKLL RRRCTRDCVF APYFPAHEPQ KFGSVHKVFG ASNVNKMLQE 60 LPEHQRSDAV SSMVYEANAR VRDPVLLSSQ TKSLFGMDMV VDQTIMGQSL WSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-38	9	85	7	83	LOB family transfactor Ramosa2.1
5ly0_B	9e-38	9	85	7	83	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g18820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097864	2e-78	BT097864.1 Soybean clone JCVI-FLGm-16M12 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027342573.1	8e-69	LOB domain-containing protein 4-like isoform X2
Swissprot	Q9SHE9	1e-49	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1S3U1B2	1e-57	A0A1S3U1B2_VIGRR; LOB domain-containing protein 4
STRING	XP_002513395.1	6e-58	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	6e-52	LOB domain-containing protein 4