PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g20460.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 264aa    MW: 29441.7 Da    PI: 4.7798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g20460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149e-051622001255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++ +L +l+ +      +K + a++L +A+ YI+ Lq
  Vradi05g20460.1 162 RKEKLSDRITTLHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 200
                      6679999*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.318150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-10161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-6162204No hitNo description
Gene3DG3DSA:4.10.280.101.1E-7164208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MMTGFPNWWS MHPPSLIPPQ YVLPSSSISF NFFTENPEPP QSWTQLLSTG LPGEEEKLGF  60
IDFQPKKFGN WDDQILDTAS GVSNTFDEIK QENSQRGTLY EHGREEFQAS GSADSSWSHM  120
VPVSSTGSSC VTSISGNNIL DFSYNKSDHR KNLLRDQISE VRKEKLSDRI TTLHQLVSPF  180
GKTDTASVLL EAIGYIRFLQ GQIEALSSPY LEDASKNTRN QQSEGEDKAK ELKSRGLCLV  240
PVSCTEDVVS QNDWGTRIYG RGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g20460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-152AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500305.10.0transcription factor bHLH68
TrEMBLA0A1S3U2Q60.0A0A1S3U2Q6_VIGRR; transcription factor bHLH68
STRINGXP_007150642.11e-143(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-30bHLH family protein