PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g21060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 127aa    MW: 14550.6 Da    PI: 9.4042
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g21060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-062345123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Vradi05g21060.1 23 FVCEICNKGFQRDQNLQLHRRGH 45
                     89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-52146No hitNo description
Gene3DG3DSA:3.30.160.602.5E-62245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.2E-52345IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0172345IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9492345IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
SMARTSM003552406494IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MDFDPEAEVV ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTGKEIR  60
KKVYVCPEAS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKNVAA ESSPNGSYHE  120
QNWLHD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14961KLKQRTGKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g21060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-162AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502282.13e-71protein indeterminate-domain 11-like isoform X2
RefseqXP_022637175.14e-71protein indeterminate-domain 11-like isoform X1
RefseqXP_022637176.14e-71protein indeterminate-domain 11-like isoform X1
RefseqXP_024365599.17e-71protein indeterminate-domain 1-like isoform X1
SwissprotQ9SCQ62e-69IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1S3U8D08e-70A0A1S3U8D0_VIGRR; protein indeterminate-domain 11-like isoform X2
STRINGPP1S165_3V6.17e-70(Physcomitrella patens)
STRINGPP1S43_228V6.16e-70(Physcomitrella patens)
STRINGGSMUA_Achr7P25960_0015e-70(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-72indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]