PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi05g22200.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 243aa MW: 27960.6 Da PI: 6.1157

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g22200.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.4	2.1e-27	78	166	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k ++ r++ra+tr gCka++++k ek+gkw++tk++++HnH+l+ Vradi05g22200.1 78 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFSSVRKPRASTREGCKAMIHIKYEKSGKWVITKFVKDHNHPLV 166 9************************************999999989*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-25	78	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MESQLIDRSD AMEVSGNVDL STYEVQVDQE TYEVDPNEGC RVLESSSGGE LGICDDDHAI 60 QEPYEGMEFE SEDAAKIFYD EYARRVGFVM RVMSCRRSER DGRILARRLG CNKEGYCVSI 120 RGKFSSVRKP RASTREGCKA MIHIKYEKSG KWVITKFVKD HNHPLVVSPR EARQTMDEKD 180 KKIQELTAEL RHKKRLCATY QEQLTSFMKV VEEHNEKLST KIHLVVNNLK EFESIDEILH 240 QT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g22200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014498549.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_014498550.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A1S3TXR2	1e-180	A0A1S3TXR2_VIGRR; protein FAR1-RELATED SEQUENCE 5 isoform X1
STRING	XP_007148636.1	1e-175	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-106	FAR1 family protein