PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g22830.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 238aa    MW: 27022 Da    PI: 10.3878
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g22830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.6e-071081481055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+++ ++   L++l+P++     kK++  + Le+A +Y++ Lq
  Vradi05g22830.1 108 RQRRQKLSEKTRCLQKLMPWD-----KKMDQGTLLEEAYKYVRFLQ 148
                      9*******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.96698147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-10104158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-4104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.35E-5106150No hitNo description
Gene3DG3DSA:4.10.280.103.8E-9107155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-4108148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MYSGDGSSLD PMFSGTSLQS LLSLNPSLFA DGFPTLASLT DDPTLIPQPA EAPKVLVPKT  60
EPSQPFKFFP QYHPSPFLRL PQLRSAEQPQ PKRQRLESPV IPQSNLARQR RQKLSEKTRC  120
LQKLMPWDKK MDQGTLLEEA YKYVRFLQAQ FRVLQSMPSH SSSSLPSFRQ NSAVFVDLEK  180
LNRSQLLQVL VNSPVAQTML YSQGFCVFSL EQLSLLRKLS DRRHHHHNHL SSKSTFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g22830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500688.11e-171transcription factor bHLH117
TrEMBLA0A1S3U3T41e-170A0A1S3U3T4_VIGRR; transcription factor bHLH117
STRINGXP_007149941.11e-143(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-22bHLH family protein