PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi06g02470.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 153aa MW: 17106.4 Da PI: 6.8714

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g02470.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	24.1	7.8e-08	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+v gL ++h+kSHLQ+YR Vradi06g02470.1 1 MHVRGLRIAHIKSHLQMYRN 20 99*****************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-6	1	21	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MHVRGLRIAH IKSHLQMYRN MKGYAKNCAD ELMEGNVKDF KVCSICPTQR IMKRELHLLD 60 KKKGLSQSNE ETDYDLNQEA ESSSSCLVRD DVSNVPNLLF SFSTPLISMM KSENSEDMMH 120 FSSSTTAPAN HSIHSSSTPS FGNSYINLDL AI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g02470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	3e-66	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022637361.1	1e-110	uncharacterized protein LOC111241771
TrEMBL	A0A3Q0F1L2	1e-109	A0A3Q0F1L2_VIGRR; uncharacterized protein LOC111241771
STRING	XP_007141445.1	6e-67	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9186	28	39