PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g02520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 517aa    MW: 56604.1 Da    PI: 6.975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g02520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.5e-10335361430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                       hn  ErrRRdriN+++  L++l+P++
  Vradi06g02520.1 335 VHNLSERRRRDRINDKMRALQQLIPNS 361
                      6************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-9328363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-10328364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.791331386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-7334363No hitNo description
PfamPF000101.6E-7335361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MKNTISGWDF ESDTCLTSQR KPTGLDHELV ELLWQNGQVV MHSQTNRKLP GNSSNLRQLP  60
KTTQSNNLDQ EEAAPWIQYP LDDPLEQEFC SNLLSELPPP CEVESYYKQI RELEEEKFAN  120
IFSPGARHHP PSPSQLLPSI MKSSCAQGLQ ENLMSAPGFH VPDSSQKIND FGASRKVLNF  180
PHFSAPRNVS SPSQKTAVNL SQSEAREHSV ITVGSSHCGS NHIPQDQDVN RVSSSGVWAT  240
TNNATLSAEP EAIDCIHRSE RGKSEMIEPT VASSSGGSGS TGIGRTCSQS TRGHGQKRKG  300
TEEEALEEQS EATELKSADG NKLSQRSRRN RAAEVHNLSE RRRRDRINDK MRALQQLIPN  360
SNKVMCMGAG MTPVMFPGIQ HYMSQMGMGI GGPSLPSIHN PMQLPKVGQA MSVTQPQPQM  420
PNHNLLCQNP VLGAFNYQNQ MQNQCLSEQY ARYMGYHLMN SASQPMNALR YGSQAMQHSE  480
IMIAGSNNSS GPMSGTPNIA NVNDAVSGKT GSSTFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g02520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502838.10.0transcription factor PIF4
TrEMBLA0A1S3U9X60.0A0A1S3U9X6_VIGRR; transcription factor PIF4
STRINGXP_007141451.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.44e-23phytochrome interacting factor 3-like 6