PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g03040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 444aa    MW: 50434.6 Da    PI: 5.6691
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g03040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-172269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++v+++G+g+W+ + +  g+ R++k+c++rw ++l
  Vradi06g03040.1 22 KGPWTAEEDAILAEYVTKHGPGNWNIVQQNTGLLRCGKSCRLRWTNHL 69
                     79******************************99***********996 PP
2Myb_DNA-binding48.81.7e-1575118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+ + +++++++G++ W++ a++++ gRt++++k++w++
  Vradi06g03040.1  75 RGAFTKEEQRKVIELHAEMGNK-WAKMAQKLP-GRTDNEIKNFWNT 118
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-231472IPR009057Homeodomain-like
PROSITE profilePS5129417.0631769IPR017930Myb domain
SuperFamilySSF466891.1E-2919116IPR009057Homeodomain-like
SMARTSM007174.9E-142171IPR001005SANT/Myb domain
PfamPF002491.3E-152269IPR001005SANT/Myb domain
CDDcd001672.78E-112469No hitNo description
PROSITE profilePS5129425.10570124IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2473123IPR009057Homeodomain-like
SMARTSM007171.1E-1574122IPR001005SANT/Myb domain
PfamPF002491.3E-1475118IPR001005SANT/Myb domain
CDDcd001675.28E-1277120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MSSFSNEDQS NDNQSQENNL RKGPWTAEED AILAEYVTKH GPGNWNIVQQ NTGLLRCGKS  60
CRLRWTNHLR PDLRRGAFTK EEQRKVIELH AEMGNKWAKM AQKLPGRTDN EIKNFWNTRL  120
KKRKRIGLDL YPDGIKPVSD AHNPNTTLAT YTHGNEVVGT SSQHAMLNNF SNTQNQPLPV  180
QPISMVRENM KPPQEMQPSE VPRQLQLPEA GRSSYVPDVV FNTPNKRLRV LPNSMVRGNM  240
KPSGVPQGMQ LSEVPEELQR HGTSSYVPHV VFNSSSNTPN QSLCVQAIPM VRENMEPSGI  300
PQEMQLPDVL DKLQLPEADF DALLGEFAYD DYACLNGPFS TSELPPLPSC HDITFEESMI  360
ETNQYYEPRS PRSNGYLESM FYPPKVSQEQ DDFSMQGELN MRNAKEISYQ KKPENEDVLG  420
DLIWPENKHD DALYGYVRSF LKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28191234107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g03040.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428503.10.0PREDICTED: myb-like protein Q
TrEMBLA0A0L9UVB90.0A0A0L9UVB9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJX00.0A0A0S3RJX0_PHAAN; Uncharacterized protein
STRINGXP_007141541.17e-87(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4079922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.29e-59myb domain protein 101