PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g04330.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 230aa    MW: 26557.1 Da    PI: 10.3849
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g04330.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-181055147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l+++v+q+G ++W++I++ ++ gR++k+c++rw + 
  Vradi06g04330.1 10 KGSWSPQEDATLLKLVNQYGARNWSLISSSIP-GRSGKSCRLRWCNQ 55
                     799*****************************.***********985 PP
2Myb_DNA-binding55.31.5e-1764106347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T  Ed+++++a++ +G++ W+tI+r ++ gRt++ +k++w++ 
  Vradi06g04330.1  64 PFTSAEDQIIIKAHAIHGNK-WATISRLLP-GRTDNAIKNHWNST 106
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.592556IPR017930Myb domain
SuperFamilySSF466891.58E-307103IPR009057Homeodomain-like
SMARTSM007177.7E-16958IPR001005SANT/Myb domain
PfamPF002495.6E-181055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-251163IPR009057Homeodomain-like
CDDcd001674.54E-141254No hitNo description
PROSITE profilePS5129425.24557111IPR017930Myb domain
SMARTSM007171.4E-1461109IPR001005SANT/Myb domain
PfamPF002492.0E-1464106IPR001005SANT/Myb domain
CDDcd001674.27E-1164107No hitNo description
Gene3DG3DSA:1.10.10.607.3E-2364110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTDVGNDRVK GSWSPQEDAT LLKLVNQYGA RNWSLISSSI PGRSGKSCRL RWCNQLSPEV  60
QHRPFTSAED QIIIKAHAIH GNKWATISRL LPGRTDNAIK NHWNSTLRRR STMSQSAAAA  120
SPNTKRASPS EWDHPFKKQL VEKEKEQERI AIPVITPLSL FPFGEKSDRK VEEEEKKVWE  180
EFKVNNNNNK ISNQDYFLQV MRRMIADEVR NYLHSLCKRR EYVHPNLHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3871104107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g04330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502988.11e-172transcription factor MYB1
SwissprotO231607e-52MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A1S3UAD31e-170A0A1S3UAD3_VIGRR; transcription factor MYB1
STRINGXP_007141751.11e-95(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-54myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]