PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g04380.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 131aa    MW: 14402.3 Da    PI: 7.4125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g04380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-117098334
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskap 34
                     ++h+++E+rRRdriN  +++Lr+l+Pk+   +
  Vradi06g04380.1 70 KSHSQAEKRRRDRINAQLATLRKLIPKS---D 98
                     79************************96...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-867102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.0167130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-107097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-87098IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.38E-770101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MESYHYSSGW PLATNMAQCN SAPNSDQLSP FSVPTIQTPP LASDPPSLQF TEFPLWPASI  60
AEDRVASASK SHSQAEKRRR DRINAQLATL RKLIPKSDKC KVFLNGTLDA SLYAETQMIY  120
EMQQSAVIAL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g04380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-131AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503844.14e-67transcription factor bHLH51
TrEMBLA0A1S3UD108e-66A0A1S3UD10_VIGRR; transcription factor bHLH51
STRINGXP_007141752.15e-60(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.18e-10bHLH family protein