PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi06g04760.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 306aa MW: 34916.6 Da PI: 7.5645

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g04760.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.2	1.8e-13	126	170	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + ++t+ q+ s+ qky Vradi06g04760.1 126 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 170 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.154	22	77	IPR017884	SANT domain
SMART	SM00717	2.4E-8	23	75	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.28E-11	25	79	IPR009057	Homeodomain-like
CDD	cd00167	1.43E-6	26	72	No hit	No description
PROSITE profile	PS51294	19.353	119	175	IPR017930	Myb domain
SuperFamily	SSF46689	3.36E-16	121	175	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-17	122	174	IPR006447	Myb domain, plants
SMART	SM00717	5.6E-11	123	173	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-11	123	169	IPR009057	Homeodomain-like
CDD	cd00167	7.60E-9	126	170	No hit	No description
Pfam	PF00249	5.8E-11	126	170	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MELETLYPPC FMPDSNWFVE ESQSTEWSRE DNKKFESALA IYDKDTPDRW FKVAAMIPGK 60 TVFDVIKQYR ELEEDVSEIE AGRVPIPGYL ASSFTFELVH NHNYDGCRRR PAAVRGSDQE 120 RKKGVPWTEE EHRRFLMGLL KYGKGDWRNI SRNFVVTKTP TQVASHAQKY YIRQKVSGGK 180 DKRRPSIHDI TTVNLTETCA SDKIKSPLFN VSPMITPQQK LNSMSKVQLD WTSHCNDGSL 240 MVFNPNRDNL FVSSSSDITS MALKMQGQDL YDCALHEAYA KVKVPGFGMP PRDFNNEAIF 300 GIHAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-16	27	89	11	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g04760.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014505357.1	0.0	transcription factor DIVARICATA isoform X1
Swissprot	Q8S9H7	6e-93	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A1S3UH45	0.0	A0A1S3UH45_VIGRR; transcription factor DIVARICATA isoform X1
STRING	XP_007141798.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF466	34	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	2e-93	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]