PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g05140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 224aa    MW: 24705.7 Da    PI: 5.7566
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g05140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.42.4e-3812110198
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC++dCv+apyf  +q +++fa+vhk++Gasnv+kll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lqqq+ +l++e
  Vradi06g05140.1  12 SCGACKFLRRKCTSDCVFAPYFSYDQaSSHFAAVHKIYGASNVSKLLSHLPIQNRRDAAITISYEALARMHDPIYGCVAHIYALQQQVVNLQEE 105
                      6***********************9978****************************************************************** PP

           DUF260  94 lallk 98 
                      +++l+
  Vradi06g05140.1 106 IDALG 110
                      98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.52611113IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3612109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MPIKTMTGFG SSCGACKFLR RKCTSDCVFA PYFSYDQASS HFAAVHKIYG ASNVSKLLSH  60
LPIQNRRDAA ITISYEALAR MHDPIYGCVA HIYALQQQVV NLQEEIDALG SMVANSTVSV  120
VNSGTVQAPM YSDNGIPYDT LQHDAMRTQY FQNNLANFLS EDGNARALQS FESQMNIELP  180
NAHVEEPSFG DSNSNPLEQF LSGIDQEVFV NHPWFKHNAD IKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3651084106LOB family transfactor Ramosa2.1
5ly0_B2e-3651084106LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g05140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503007.11e-165LOB domain-containing protein 33
SwissprotQ9LHS85e-56LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A1S3UAE91e-163A0A1S3UAE9_VIGRR; LOB domain-containing protein 33
STRINGXP_007141403.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-56LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]