PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g06330.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 183aa    MW: 20283.6 Da    PI: 4.6596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g06330.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.4e-212575155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr+++ +grW+AeIrdp+    r kr +lg+f+taeeAa  +++a+ kl+g
  Vradi06g06330.1 25 TKFRGVRQRP-WGRWAAEIRDPT----RrKRLWLGTFDTAEEAATEYDKAAVKLKG 75
                     69********.**********84....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.6E-665182IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008479.6E-142575IPR001471AP2/ERF domain
CDDcd000187.77E-322583No hitNo description
PROSITE profilePS5103224.3162683IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-222684IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-312684IPR001471AP2/ERF domain
SMARTSM003801.6E-372689IPR001471AP2/ERF domain
PRINTSPR003672.2E-102738IPR001471AP2/ERF domain
PRINTSPR003672.2E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MLTARQCPEI SAQTNAAEVS ARRRTKFRGV RQRPWGRWAA EIRDPTRRKR LWLGTFDTAE  60
EAATEYDKAA VKLKGPNAVT NFPLTTPPPV AESPFAAIDS LSTDGGASYS DLVASPTSVL  120
TYDCDSTPFD SFHYGDVDAL GFHIDAPLRL ADVGVSLTCH PYKEEQEAFD EFDLDEFMKW  180
PY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-202784361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-202784664ATERF1
3gcc_A4e-202784664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g06330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502824.11e-118pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046822e-46PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1S3UA291e-117A0A1S3UA29_VIGRR; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_007142025.15e-93(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-34cytokinin response factor 4