PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g06910.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 142aa    MW: 16077.5 Da    PI: 4.9536
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g06910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-1685133153
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      ++y+GVr ++ +gr+v+eIrdp +   +++++l++f++ eeAa+a++  ++ l
  Vradi06g06910.1  85 PQYQGVRKRP-WGRFVVEIRDPLK---KAKVWLETFDSVEEAARAYDTIAQTL 133
                      68********.**********743...5*******************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1185134IPR001471AP2/ERF domain
CDDcd000182.20E-1985134No hitNo description
Gene3DG3DSA:3.30.730.108.5E-2186136IPR001471AP2/ERF domain
SMARTSM003802.5E-1086137IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1386134IPR016177DNA-binding domain
PROSITE profilePS5103216.72686141IPR001471AP2/ERF domain
PRINTSPR003674.8E-88798IPR001471AP2/ERF domain
PRINTSPR003674.8E-8109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDLPDPYGED VTMEDFCCTS AISTSSAYGE DVTVLNYLFW KIGCNEIGAW VLNSMFVCKS  60
IFERLDASVV TVAAAAANKS LLKEPQYQGV RKRPWGRFVV EIRDPLKKAK VWLETFDSVE  120
EAARAYDTIA QTLRCQRRWM F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-15861361465Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g06910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-56AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503086.11e-102ethylene-responsive transcription factor 3-like
SwissprotQ9LDE41e-22ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A1S3UAP01e-101A0A1S3UAP0_VIGRR; ethylene-responsive transcription factor 3-like
STRINGGLYMA18G10290.13e-24(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.19e-24ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]