PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g06970.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 323aa    MW: 37763.5 Da    PI: 9.1711
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g06970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-1792138148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W +eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Vradi06g06970.1  92 KGQWNKEEDRKLIRLVKQHGDKKWAEIAEKLE-GRVGKQCRERWNNHL 138
                      799*****************************.*************97 PP
2Myb_DNA-binding48.32.3e-15144186145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ +lvd +++lG++ W   a++++ gR+++ +k++w+
  Vradi06g06970.1 144 KDSWSEEEERILVDMHARLGNR-WCEMAKCLP-GRSENAIKNHWN 186
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.42287142IPR017930Myb domain
SuperFamilySSF466897.91E-2889185IPR009057Homeodomain-like
SMARTSM007173.5E-1691140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2793146IPR009057Homeodomain-like
PfamPF139212.7E-1895152No hitNo description
CDDcd001673.67E-1595138No hitNo description
PROSITE profilePS5129415.618143193IPR017930Myb domain
SMARTSM007178.2E-16143191IPR001005SANT/Myb domain
CDDcd001672.34E-11146189No hitNo description
Gene3DG3DSA:1.10.10.601.8E-19147191IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDIVLRGENG FQIYGYDVMN PPLTSTDTDQ FLCGHFLHHQ QQTKNNDVCA FSEWTNINQN  60
LKLCLDDMQV SCKNTKVVGR RRKKQSSVSW IKGQWNKEED RKLIRLVKQH GDKKWAEIAE  120
KLEGRVGKQC RERWNNHLRP DIKKDSWSEE EERILVDMHA RLGNRWCEMA KCLPGRSENA  180
IKNHWNATKR RQNSKRKHKK TKTSNGKPHS SILEDYIRSK TIITTNSAPS QDNNAPNPFN  240
HLFYQPFPFP NQPQPLFMHS NLDHWNIINV DHVDQTLQYP DNMHFNDTFF PPANYLPSDF  300
YVSPLFNVAS GYGNQVKGEE IW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-43911923104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-43911923104C-Myb DNA-Binding Domain
1msf_C1e-43911923104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g06970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-112AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503089.10.0transcription factor MYB119-like
TrEMBLA0A1S3UAU30.0A0A1S3UAU3_VIGRR; transcription factor MYB119-like
STRINGXP_007142225.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.18e-65myb domain protein 119