PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g07010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 305aa    MW: 34265.2 Da    PI: 8.995
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g07010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-103074345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+eE +l+ +a + + ++   +W+++a++++ g+t  +++  + 
  Vradi06g07010.1 30 KWTPEENKLFENALAVHDTDtpdRWHKVAEMIP-GKTVLDVIKQYK 74
                     8********************************.****99988875 PP
2Myb_DNA-binding43.19.7e-14135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +   Rt+ q+ s+ qky
  Vradi06g07010.1 135 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVISRTPTQVASHAQKY 179
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.4542681IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.9E-42774IPR009057Homeodomain-like
SuperFamilySSF466891.09E-112776IPR009057Homeodomain-like
SMARTSM007176.9E-112779IPR001005SANT/Myb domain
CDDcd001675.49E-93076No hitNo description
PfamPF002495.2E-93075IPR001005SANT/Myb domain
PROSITE profilePS5129420.117128184IPR017930Myb domain
SuperFamilySSF466891.36E-16129183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17131183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.9E-12132179IPR009057Homeodomain-like
SMARTSM007179.2E-13132182IPR001005SANT/Myb domain
CDDcd001679.03E-11135180No hitNo description
PfamPF002494.9E-12135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKWETVALSP TPCSPNSNPS WLVENNRSTK WTPEENKLFE NALAVHDTDT PDRWHKVAEM  60
IPGKTVLDVI KQYKELEIDV SNIEAGLIPV PGYSTATSPF TLDWVNTPGY DGFKGSGKRS  120
SSVRPHEQER KKGVPWTEEE HKLFLLGLKK YGKGDWRNIS RNFVISRTPT QVASHAQKYF  180
IRQLSGGKDK RRASIHDITT VNLTETSTTS SEDTNRSTSP HVLSQQQQPN STPTAPTTHF  240
QWCNQSSTGI AMTFNPAHER VFMSPYGANS FGVKMEARNL HNESSYLGPQ TQNMVFQMQQ  300
SSQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1331951175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g07010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505359.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-115DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S3UHE00.0A0A1S3UHE0_VIGRR; transcription factor DIVARICATA
STRINGXP_007142227.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-82MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]