PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g07040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 246aa    MW: 27412.4 Da    PI: 8.8665
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g07040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY902e-28118177159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YY Ct + +Cpvkk+v+r aed ++++ tYeg+Hnh+
  Vradi06g07040.1 118 MNDGCQWRKYGQKIAKGNPCPRAYYXCTVSpSCPVKKQVQRYAEDMSILVGTYEGTHNHP 177
                      58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-27117179IPR003657WRKY domain
SuperFamilySSF1182904.05E-25117179IPR003657WRKY domain
SMARTSM007741.7E-30118178IPR003657WRKY domain
PROSITE profilePS5081126.452118179IPR003657WRKY domain
PfamPF031061.0E-24119177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSGRAMRQIA QVLQAQQAQQ AEQAPRPRVG MNEFLCHSLA KFIGKATPDE ADDWICILEK  60
IFEAVECTKG QNLVFATYVL AGEADCGYRR RKVWQEDAKK ALKLFKLLTI LLYLRSEMND  120
GCQWRKYGQK IAKGNPCPRA YYXCTVSPSC PVKKQVQRYA EDMSILVGTY EGTHNHPLPT  180
SATTIAYITS VVASMLQSPS LTTQLGLVNS DIVPLLSSNN VLYNLNALNF TSSYHHVSKS  240
PHLFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-211181791474WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g07040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-106AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022633693.12e-86probable WRKY transcription factor 61
TrEMBLA0A3Q0EPA55e-85A0A3Q0EPA5_VIGRR; probable WRKY transcription factor 61
STRINGXP_007153834.19e-72(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-38WRKY DNA-binding protein 9