PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g11150.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 235aa    MW: 25458.9 Da    PI: 7.8068
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g11150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.2e-29107166159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YY Ct + +Cpvkk+v+r+aed ++++ tYeg+Hnh+
  Vradi06g11150.1 107 MNDGCQWRKYGQKIAKGNPCPRAYYXCTVSpSCPVKKQVQRCAEDMSILVSTYEGTHNHP 166
                      58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008603.1E-111285IPR006043Xanthine/uracil/vitamin C permease
SuperFamilySSF1182903.92E-26104168IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.2E-29105168IPR003657WRKY domain
PROSITE profilePS5081127.221106168IPR003657WRKY domain
SMARTSM007745.7E-33107167IPR003657WRKY domain
PfamPF031062.4E-25108166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005215Molecular Functiontransporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MPKCWCQSDA AEAILLGFQH YIVMLIPTAL XPQMGGGNEE KAKVIQTLLF VAGINTLLQT  60
LFGTRLPAVI GGSYTYVATT ISIILASRFS DEPDPAEGLM LLLHHIMNDG CQWRKYGQKI  120
AKGNPCPRAY YXCTVSPSCP VKKQVQRCAE DMSILVSTYE GTHNHPLPTS ATTIAYTTSA  180
AASMLQSPSL TTQLGLVNSD TVPLLSSNNV LYNLNALNFT SSYHHVSKSP HLFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-231031681074WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g11150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-120AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022633693.16e-92probable WRKY transcription factor 61
TrEMBLA0A3Q0EPA51e-90A0A3Q0EPA5_VIGRR; probable WRKY transcription factor 61
STRINGXP_007153834.18e-76(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.19e-39WRKY DNA-binding protein 61