PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g11690.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 222aa    MW: 24974.7 Da    PI: 8.2965
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g11690.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-165296147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r+ +T+eE+e+l+ a + +G + W+tIa+ +  gRt++ +k++w+ +
  Vradi06g11690.1 52 RNCFTKEEEERLIAAREIYGAK-WATIAKLFE-GRTDNALKNHWHVL 96
                     688*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.8661143IPR017877Myb-like domain
SMARTSM007172.11548IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-81953IPR009057Homeodomain-like
SuperFamilySSF466892.78E-2036103IPR009057Homeodomain-like
PROSITE profilePS5129422.09147101IPR017930Myb domain
SMARTSM007178.2E-135199IPR001005SANT/Myb domain
PfamPF002491.4E-125295IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-1854100IPR009057Homeodomain-like
CDDcd001672.59E-115597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MENSPSAAEN MPNYRVNHWR QDEDQKLTQL VQEHGKSCRL RWRNHLDPGV NRNCFTKEEE  60
ERLIAAREIY GAKWATIAKL FEGRTDNALK NHWHVLIARK RKEANNGSLQ DLTNRSTSSS  120
SHHHTLFHHM MNFNATQRAL APLSPLNFGS VPSFSDSFPF GLLNPAASSA GIMKKGLFHS  180
SSSPFTEFNK ASSSSDRKEP HDAGFKDVTF YDFLGVGADD E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-21111002107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g11690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-134AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503316.11e-149transcription factor MYB52-like
TrEMBLA0A1S3UBB71e-147A0A1S3UBB7_VIGRR; transcription factor MYB52-like
STRINGXP_007161388.11e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2020555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.12e-26myb domain protein 110