PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g11700.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 523aa    MW: 58564.9 Da    PI: 4.5242
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g11700.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS409.24e-1251755042333
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL+ecA+a+s+g+ e+a++++++l++++s +g+p qR+aay++e+Laar+a+s++ +y+al+++e +   ss++laa+++++ev+P++kf++
  Vradi06g11700.1 175 KQLLYECARALSEGNEEQAKSMINNLRQMVSIQGEPSQRIAAYMVEGLAARVASSGKCIYQALRCKEPP---SSDRLAAMQILFEVCPCFKFGF 265
                      589*****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aI+eav  e++vHiiDfdisqG+Q+++L+q+Las p+  p++R+Tgv++pe++  s   ++ +g+rL+k+Aeelg++fef++ va++++
  Vradi06g11700.1 266 IAANGAIVEAVRDEKKVHIIDFDISQGTQYITLIQTLASMPGRRPHVRLTGVDDPETVqrSVGGMNIIGKRLEKLAEELGLSFEFRA-VASKTS 358
                      ********************************************************99889999***********************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                       +++++L+++pgEal+Vn+++qlh++ de+vs+ +erd++L+lvksl+Pk+v++veq++++n+++Fl+rf+ea +yysa+fd+l+a+lpres++
  Vradi06g11700.1 359 IVSPSMLNCRPGEALVVNFAFQLHHMRDETVSTVNERDQLLRLVKSLNPKLVTIVEQDMNTNTSPFLQRFVEAYNYYSAVFDTLDATLPRESQD 452
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                      r++vEr++l+++ivn+vaceg++r+er e ++kWr+rl++aGF+p p+s+++
  Vradi06g11700.1 453 RMNVERQCLAKDIVNIVACEGEDRIERYEVAGKWRARLTMAGFTPCPMSTNI 504
                      *************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.91148522IPR005202Transcription factor GRAS
PfamPF035141.4E-122175504IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MYITDSYSSE NYEKYFRDSP SEELIEPSSS SISGNSVHPD SSYFLRASSG ASVIVNNPFD  60
SRILSTRRHN AYQSSFESDF LENRSPDGLD FDGEMRLKLQ ELERALFSDE EEEEDIFETV  120
QSMDIDPDMA EWANPLQGML LHDSPKESSS SDSSNISSIS STTKETSQNS PQTPKQLLYE  180
CARALSEGNE EQAKSMINNL RQMVSIQGEP SQRIAAYMVE GLAARVASSG KCIYQALRCK  240
EPPSSDRLAA MQILFEVCPC FKFGFIAANG AIVEAVRDEK KVHIIDFDIS QGTQYITLIQ  300
TLASMPGRRP HVRLTGVDDP ETVQRSVGGM NIIGKRLEKL AEELGLSFEF RAVASKTSIV  360
SPSMLNCRPG EALVVNFAFQ LHHMRDETVS TVNERDQLLR LVKSLNPKLV TIVEQDMNTN  420
TSPFLQRFVE AYNYYSAVFD TLDATLPRES QDRMNVERQC LAKDIVNIVA CEGEDRIERY  480
EVAGKWRARL TMAGFTPCPM STNIEIMEVL EALPLRIAYV EP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6118050325337Protein SCARECROW
5b3h_A9e-6218050324336Protein SCARECROW
5b3h_D9e-6218050324336Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g11700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504988.10.0scarecrow-like protein 1
RefseqXP_022638076.10.0scarecrow-like protein 1
RefseqXP_022638077.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1S3UG270.0A0A1S3UG27_VIGRR; scarecrow-like protein 1
STRINGXP_007161385.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]