PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g16830.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family DBB
Protein Properties Length: 243aa    MW: 26839.2 Da    PI: 7.4598
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g16830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.8e-07443538
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                      C+ +e++ ++ fC+ ++  lC+ C   +H+       H+
  Vradi06g16830.1  4 QCDVCEKHDASVFCTADEAVLCDGCDHRIHHAnklaskHQ 43
                     7******9*********************74446777776 PP
2zf-B_box25.43e-085291239
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                     + + C+ ++e ++  fC++++  lC++C +++H+   Ht+
  Vradi06g16830.1 52 QHPLCDVCQERRAFTFCQQDRAILCRECDVSIHSAneHTL 91
                     5689*****************************6688987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.58147IPR000315B-box-type zinc finger
CDDcd000214.62E-5347No hitNo description
SMARTSM003362.8E-6447IPR000315B-box-type zinc finger
SMARTSM003369.0E-125198IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2395198IPR000315B-box-type zinc finger
PfamPF006432.3E-65292IPR000315B-box-type zinc finger
CDDcd000213.55E-95498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MKIQCDVCEK HDASVFCTAD EAVLCDGCDH RIHHANKLAS KHQRFSLLRP KQHPLCDVCQ  60
ERRAFTFCQQ DRAILCRECD VSIHSANEHT LKHDRFLLTG VKLSASSSPQ ETPSPSNSAP  120
DSLFDVSHQK TIPLSSTVSK VAVEAAASTG ASSISEYLIE TLPGWQVEDF LDSYSVPFGF  180
CKNVGIWVPQ APPPLLSSSQ MNRAIGQNEN NIKGSRSRLK DDNFTVPQIS PQSNSKRGRF  240
LW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g16830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503468.11e-176B-box zinc finger protein 21-like
SwissprotQ9LQZ74e-69BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A1S3UBQ71e-174A0A1S3UBQ7_VIGRR; B-box zinc finger protein 21-like
STRINGXP_007160700.11e-145(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.15e-69salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]