PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g00330.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 193aa MW: 22905.1 Da PI: 8.2061

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g00330.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.6e-18	40	93	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq+ Le+ F +++++ e++ ++A +lg++ rqV vWFqNrR ++k Vradi07g00330.1 40 KKRKLTAEQVSLLEKNFCSEQKLESERKDQIAFELGMDPRQVAVWFQNRRFRWK 93 45699************************************************9 PP
2	HD-ZIP_I/II	109.1	3.2e-35	40	130	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+l++eqv+lLE++F +e+kLe+erK ++a eLg++prqvavWFqnrR R+ktk+lE++y+ Lk+ +++ + ++++Le+ v +L+e+l Vradi07g00330.1 40 KKRKLTAEQVSLLEKNFCSEQKLESERKDQIAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNVHETTMLQKCHLETRVLKLEEQLL 130 9**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.196	35	95	IPR001356	Homeobox domain
SMART	SM00389	3.1E-16	38	99	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-15	40	93	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-18	40	103	IPR009057	Homeodomain-like
CDD	cd00086	1.69E-12	40	96	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.4E-19	42	102	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	70	93	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MLFSHQYPGA LFTEVTPPQQ GKEAKPRRKR NKNGAAATPK KRKLTAEQVS LLEKNFCSEQ 60 KLESERKDQI AFELGMDPRQ VAVWFQNRRF RWKTKKLEEE YSNLKNVHET TMLQKCHLET 120 RVLKLEEQLL EAKKEIQQLQ ERDERASSKH LLEAVNPPFP EEFRVEEYDY GDVFYIPETH 180 YINGMEWINL YM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	42	RKRNKNGAAATPKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g00330.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-152	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022640137.1	1e-142	homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	7e-55	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A3Q0FCN6	1e-140	A0A3Q0FCN6_VIGRR; homeobox-leucine zipper protein ATHB-40-like
STRING	XP_007156020.1	1e-111	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-47	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]