PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g00380.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 333aa    MW: 36570.4 Da    PI: 9.2117
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g00380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS261.33.4e-80333136374
             GRAS  36 dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129
                      +p++R+a++f+ AL++ l++s    +     + +s  + +++++ +k+fs +sPi+ fs +t+Nqa+le ++g++ vH+iDf+i+ G+Q+++L+
  Vradi07g00380.1   3 KPLHRAAFHFKDALHSILSGSNRAAS----NRLSSMAEIVQTIKTFKAFSGISPIPMFSIFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLM 92 
                      799****************9444444....4444444589****************************************************** PP

             GRAS 130 qaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222
                      +++a++++g+   lRiT+v+++e   + e + ++e+L++fA+ lg++++ +++  +++e++++++ r+  gE++aV l+ +++  l   +s+  
  Vradi07g00380.1  93 KEIAEKAAGASlLLRITAVVPEE--YAVESRLVRENLNQFAHDLGIRVQVDFVPLRTFEAVSFKAVRFVDGEKIAVLLSPAIFCRL---GSIGA 181
                      *******777669********66..99999**********************9999***************************999...66666 PP

             GRAS 223 erdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhet 311
                         ++L  v+++ P vvv+v+ e  ++   ++sF ++++++le+ys+++dsl+a++++    e+ + +E  ll+++i  +v  + ++       
  Vradi07g00380.1 182 SVGAFLADVRRMAPGVVVFVDGEgwTEAtAAASFRRGVVNSLEFYSMMLDSLDASVAAGGggEWVRRIEMLLLRPKIFAAVESARRR------- 268
                      666********************553334677***********************9998888999*************999877665....... PP

             GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         Wre++  aG++pv+ls++a  qa++ll+kv+ +g++ve+++++lvl+W++r++v++SaWr
  Vradi07g00380.1 269 SPPWREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVEKRHAELVLCWHERAMVATSAWR 331
                      89************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.4491311IPR005202Transcription factor GRAS
PfamPF035141.2E-773331IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAKPLHRAAF HFKDALHSIL SGSNRAASNR LSSMAEIVQT IKTFKAFSGI SPIPMFSIFT  60
TNQALLETLN GSSFVHVIDF EIGLGIQYAS LMKEIAEKAA GASLLLRITA VVPEEYAVES  120
RLVRENLNQF AHDLGIRVQV DFVPLRTFEA VSFKAVRFVD GEKIAVLLSP AIFCRLGSIG  180
ASVGAFLADV RRMAPGVVVF VDGEGWTEAT AAASFRRGVV NSLEFYSMML DSLDASVAAG  240
GGGEWVRRIE MLLLRPKIFA AVESARRRSP PWREAFYGAG MRPVQLSQFA DYQAECLLAK  300
VQIRGFHVEK RHAELVLCWH ERAMVATSAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-22333138375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g00380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505917.10.0scarecrow-like protein 15
SwissprotO232101e-129SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S3UIR00.0A0A1S3UIR0_VIGRR; scarecrow-like protein 15
STRINGXP_007156025.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-131GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]