PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g00610.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 70aa    MW: 8218.22 Da    PI: 8.9916
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g00610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.1e-08446344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++  +   +W  +a+ +g  R+ +++ks++
  Vradi07g00610.1  4 SWTQRQNKLFEQALALYDREtpdRWQNVANVVG--RSVEEVKSHY 46
                     7*****************88************8..*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.855154IPR017884SANT domain
SMARTSM007172.4E-6152IPR001005SANT/Myb domain
SuperFamilySSF466899.06E-13357IPR009057Homeodomain-like
CDDcd001677.00E-5450No hitNo description
PfamPF002498.5E-6446IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-4456IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MASSWTQRQN KLFEQALALY DRETPDRWQN VANVVGRSVE EVKSHYEILK EDVKRIEHGQ  60
VPFPRYKTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-265681175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g00610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-102AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156054.12e-41hypothetical protein PHAVU_003G254400g
SwissprotF4JVB83e-26RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0L9TNY12e-43A0A0L9TNY1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R4H22e-43A0A0S3R4H2_PHAAN; Uncharacterized protein
TrEMBLA0A4D6KZ542e-43A0A4D6KZ54_VIGUN; Uncharacterized protein
STRINGGLYMA02G06240.16e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-28RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]