PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g01760.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 228aa    MW: 26206.8 Da    PI: 9.4219
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g01760.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.51.7e-2832118178
         trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                      rWt+qe+l+Li+++r+ e+++rrg+         + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e + ++es s 
  Vradi07g01760.1  32 RWTRQEILVLIQGKRDAENKFRRGRttglplgsgQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWEPQIKEESDSF 118
                      8**********************97778888888********************************************997776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.5623298IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.0E-53297IPR009057Homeodomain-like
PfamPF138373.9E-1332114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTNHQLNGLN SKTSDTLGRV PLGQFIPPRL PRWTRQEILV LIQGKRDAEN KFRRGRTTGL  60
PLGSGQVEPK WASVSSYCRK HGVNRGPVQC RKRWSNLAGD YKKIKEWEPQ IKEESDSFWV  120
APKVRRWLSL FHRLLQMTVT VCKDMHMDMD TKRGYVSHGK HESGDSLIRR CSCCNESLSS  180
QLYPPYLQLK PSWGDENYMS KGPLIVEEAI DDEKSDKDLD FERNNDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g01760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-136AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506191.17e-87trihelix transcription factor ASR3-like
TrEMBLA0A1S3UJI42e-85A0A1S3UJI4_VIGRR; trihelix transcription factor ASR3-like
STRINGXP_007142589.12e-60(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.15e-55Trihelix family protein