PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g02940.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 161aa    MW: 18671.6 Da    PI: 10.6011
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g02940.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-21942134
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae 34
                     krienk+nrqvtfskRr+g+lKKA+E+SvLCdae
  Vradi07g02940.1  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAE 42
                     79******************************97 PP
2K-box1095.2e-364112812100
            K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      a + +++ e+++Lk++i+ Lqr++Rh++GedL+s+slkeLq+LeqqL+++lk+iR+++n+l++e+i+elqkkek +qe+n++L kk++e
  Vradi07g02940.1  41 A-EGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKE 128
                      4.679*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.488142IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-19142IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-22152IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-18323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-171042IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-182338IPR002100Transcription factor, MADS-box
PfamPF014862.7E-3041126IPR002487Transcription factor, K-box
PROSITE profilePS5129716.90342132IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEGNWTIEYT RLKAKIDLLQ  60
RNHRHYMGED LGSMSLKELQ SLEQQLDTAL KQIRTRRNQL MYESISELQK KEKVIQEQNN  120
MLAKKIKEKE KVAAQQAQWE HPNHGVNASF LLPQPLLNMG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-19481222397Developmental protein SEPALLATA 3
4ox0_B2e-19481222397Developmental protein SEPALLATA 3
4ox0_C2e-19481222397Developmental protein SEPALLATA 3
4ox0_D2e-19481222397Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g02940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5887440.0AB588744.1 Vigna unguiculata VuAP1 mRNA for APETALA1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624024.11e-106truncated transcription factor CAULIFLOWER A isoform X2
RefseqXP_028206840.11e-106truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ6E6S72e-82AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0L9TN641e-105A0A0L9TN64_PHAAN; Uncharacterized protein
STRINGGLYMA16G13070.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]