PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g04070.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 139aa    MW: 15442.9 Da    PI: 9.2748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g04070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-071361655
                     HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +++ f+ L  llP++   p  K +K++++ +Av YIk+L+
  Vradi07g04070.1  1 MKNMFASLHALLPHL---P-SKADKSTVVDEAVSYIKNLE 36
                     6899**********6...3.8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-9149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-7140No hitNo description
SuperFamilySSF474596.28E-9148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-4136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.944135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0072671107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MKNMFASLHA LLPHLPSKAD KSTVVDEAVS YIKNLERTLE NLQKQKEEKK GFDKTWAASN  60
MVLNIRGNEA QFSICSVHKP GLMTMIASVL EKHNIELISA TISANGNGST CMIQVHVSFK  120
LHSHHTSMFL IHNFSMHV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g04070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-126AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506252.12e-64transcription factor bHLH95
TrEMBLA0A0L9VAM95e-78A0A0L9VAM9_PHAAN; Uncharacterized protein
STRINGXP_007153587.16e-57(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-15bHLH family protein