PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g06060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 78aa    MW: 8923.15 Da    PI: 9.1198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g06060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.0001314353455
                     TTS-STCHHHHHHHHHHHHHHH CS
              HLH 34 pskKlsKaeiLekAveYIksLq 55
                     +s K++Ka+i e ++ YI + q
  Vradi07g06060.1 14 SSSKMNKATIIENVIMYIDNIQ 35
                     689***************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-51453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-61551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MVKAIQVGFI RRRSSSKMNK ATIIENVIMY IDNIQHKVQS FIQEPHQLEA TSEETTFKKL  60
DEINSAQHTN NFSTDIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g06060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-