PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g06540.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 229aa    MW: 25837.9 Da    PI: 4.9594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g06540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-184291255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y GVr+++ +grWvAeI+d      ++ r +lg+++ ae+Aaka+++a++ l+g
  Vradi07g06540.1 42 RYIGVRQRP-SGRWVAEIKDtI----QNIRLWLGTYDNAEDAAKAYDEAARLLRG 91
                     799******.7*********33....35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.62E-264198No hitNo description
SuperFamilySSF541719.81E-194299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-264298IPR001471AP2/ERF domain
PfamPF008474.7E-124291IPR001471AP2/ERF domain
SMARTSM003803.6E-3042105IPR001471AP2/ERF domain
PROSITE profilePS5103219.0984299IPR001471AP2/ERF domain
PRINTSPR003675.6E-74354IPR001471AP2/ERF domain
PRINTSPR003675.6E-76581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MANKRKRWEK KSEEGNTEWE KLREEAASMA AAILGARRAN KRYIGVRQRP SGRWVAEIKD  60
TIQNIRLWLG TYDNAEDAAK AYDEAARLLR GANTRTNFFP SQSSPYVSAL PPKGSGEDFS  120
LGYNFAENVY DEEKKIVSGK GCDFQFLESG GSVSYSFSPF EIAEEMVGAI EENKYYDVDD  180
SALGRETLMM KYERKFSACF YTLTGVSECL RLQVGQENGK ELENFLGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-134198462ATERF1
3gcc_A4e-134198462ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g06540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-165AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506353.16e-77uncharacterized protein LOC106766107
TrEMBLA0A1S3UJZ11e-75A0A1S3UJZ1_VIGRR; uncharacterized protein LOC106766107
STRINGXP_007158631.16e-58(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-17related to AP2 11