PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g08950.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BBR-BPC
Protein Properties Length: 326aa    MW: 36584.3 Da    PI: 9.7037
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g08950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3144.7e-96473251301
        GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvens 90 
                      mddd  +  n+gyyep      +lglqlm  +++rd+k+    r+  + l++ ++++++rd    +  + l+   ++ + ++++++++++ +n 
  Vradi07g08950.1  47 MDDDVLNMPNWGYYEPF--RGGHLGLQLMPGMTDRDTKPylpaRDPSV-LMGASGTFHPRDCVVSEAPMQLNYVRDNWTSQRDRYFSMQQPTN- 136
                      899988779******98..4579****************9*9888888.9***********55555555555533333444667777777554. PP

        GAGA_bind  91 lasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
                            +++ vl++t+ + +lq      ++++ +   ++ + +e+l ++++  ++k++++k      ++pk+kk +k+k+       + + +  
  Vradi07g08950.1 137 ------PNYAVLPETSVAPNLQI-----IQPPDTSrDEKVDRIEELVVKKEGGQSKKRQTK---GALTTPKAKKPRKPKD-------NGNVPV- 208
                      ......46899*******99999.....333333312333444444444433333333322...3556666666666666.......455666. PP

        GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277
                       +r+k +kk+++lv+ng+++D+s+lP+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgafkk+LekLaaeGy
  Vradi07g08950.1 209 -QRVKPPKKTMELVINGIDMDISGLPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGY 301
                      .6899***************************************************************************************** PP

        GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301
                      +++np+DLk+hWA+HGtnkfvtir
  Vradi07g08950.1 302 NFANPIDLKTHWARHGTNKFVTIR 325
                      ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.8E-15447325IPR010409GAGA-binding transcriptional activator
PfamPF062174.6E-10547325IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGIGDLQAAL LFFVCSLWFM EKCRNDYDVR ITFLFLLSLG FWVAVAMDDD VLNMPNWGYY  60
EPFRGGHLGL QLMPGMTDRD TKPYLPARDP SVLMGASGTF HPRDCVVSEA PMQLNYVRDN  120
WTSQRDRYFS MQQPTNPNYA VLPETSVAPN LQIIQPPDTS RDEKVDRIEE LVVKKEGGQS  180
KKRQTKGALT TPKAKKPRKP KDNGNVPVQR VKPPKKTMEL VINGIDMDIS GLPIPVCSCT  240
GSPQQCYRWG CGGWQSACCT TNVSIYPLPM SMKRRGARIA GRKMSQGAFK KVLEKLAAEG  300
YNFANPIDLK THWARHGTNK FVTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g08950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505856.20.0protein BASIC PENTACYSTEINE2 isoform X1
SwissprotQ9LDE21e-102BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A1S3UIJ90.0A0A1S3UIJ9_VIGRR; protein BASIC PENTACYSTEINE2 isoform X1
STRINGXP_007158817.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-104basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]