PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g09210.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 518aa    MW: 57861.7 Da    PI: 5.3099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g09210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.4e-13322368354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h + E++RR+++N ++  Lr l+P++     +K + a+++  A++YI++L
  Vradi07g09210.1 322 TKHFATEKQRREQLNGKYKILRNLIPNP-----TKIDRASVVGDAIDYIREL 368
                      79**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-15317386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.046319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11322377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10322368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-11322368No hitNo description
SMARTSM003532.8E-10325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MSTGDRPKMH EQSGCFDPNT MEESVPSLKD NFPQTLADPL IPSSPMVVDN TTNTDNGLEE  60
NLRLSVEELS FNHHNLQHQD ISTYASGITP TSASDIPHSH SQQHLCLNMG NSYINNTNNM  120
DNHLVQQVID VLPYQQSTWD PTTVQELPDI AYANQIEQQQ NEQQFQQMET QNCSQSFNPS  180
SILDPPYPSP DLLNLLHLPR CSAPSLHTNP TICLTNPTQN TPNFQNPLPF LGDLPIGSDN  240
NTSASSVLYD PLFHLNLPPQ PPALRELFQS LPRGYSLPTN SRNGSLFGGD EIEGDGSQLD  300
MGVLEFNRVT PTVAKGRGGK ATKHFATEKQ RREQLNGKYK ILRNLIPNPT KIDRASVVGD  360
AIDYIRELIR TVNELKLLVE KKRYGRERCK RPKTEEDGAE SCNIKPFGDP DGSIRTSWLQ  420
RKSKDSEVDV RIIDDDVTIK LFQRKKINCL LFVSKVLDEL QLELHHVAGG HVGEYCSFLF  480
NSKIIEGSSV YASAIANRVI DVLDCQYTAS VPHTNNY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g09210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506449.10.0transcription factor bHLH91
RefseqXP_022640200.10.0transcription factor bHLH91
TrEMBLA0A1S3UKI80.0A0A1S3UKI8_VIGRR; transcription factor bHLH91
STRINGXP_007163873.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-78bHLH family protein