PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g09310.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 320aa    MW: 36286.2 Da    PI: 4.7973
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g09310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16.4e-151563149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ien++   +tf+kR+  i KKA+ELS+LC+a+v +++  s+g+ + y
  Vradi07g09310.1 15 KKIENNRDLLITFTKRKRDIHKKASELSTLCGAKVDILMHTSSGNWFSY 63
                     689***************************************9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.769767IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-14766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-17972IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-12929IPR002100Transcription factor, MADS-box
PfamPF003191.7E-141663IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEGKLIKQKQ KREIKKIENN RDLLITFTKR KRDIHKKASE LSTLCGAKVD ILMHTSSGNW  60
FSYGEPSHQA MIVSSDKQNL SKDVINLVED QTKLEIDELC AKNKRLIDQM HYEEEREKEL  120
TEIMKTRNVH APPNQVNGFN FCPNYTKGSS ISEVVFGANN EAYGIGAIES ILPDISFTPM  180
DEGKEFKFFP YGERREDLFD IVYPNKYLYH GYSFFVDDSG STFASFPAKQ DQELNPNDGN  240
GSIGSTHILS SCSNQSQGNN SFIPNANNET IRGNENGGEN DSFALLSSSH LNEQQETNLF  300
MDIENELRDD FSFPQFPWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g09310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232939.19e-93agamous-like MADS-box protein AGL23
TrEMBLA0A4D6L5W51e-173A0A4D6L5W5_VIGUN; MADS-box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1822966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.14e-12AGAMOUS-like 64