PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g10140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 289aa    MW: 31246.2 Da    PI: 8.3605
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g10140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof66.64.2e-2144762860
           zf-Dof 28 qPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      Pr+fCk+CrryWtkGGalrnvP+Ggg+rknk+
  Vradi07g10140.1 44 GPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKN 76
                     5******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088415.2772276IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-134575IPR003851Zinc finger, Dof-type
PfamPF027011.6E-154576IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKLKKGYLKM MSISEAELNS LIMDDRGCVA EGGQWDMCLF WAWGPRHFCK TCRRYWTKGG  60
ALRNVPIGGG CRKNKNIGVA NSVAKTASTK MKAVASELGK SPGFGGFEVE HELPPPSQIL  120
WGSPQNTHLL ALLRATQNQN PNPNPSPMSI KEEGTLIGHM VSTEPLVSNT LLNHRTLGYD  180
AVAQVPSLGL FGRSNQDQQQ NGGFLLGEHQ NSGIQEIYQK LRSSSANNYC GDNSSQVFMG  240
NMASNYSSSV SNNIMETTSV AGGEFGYWNA PTFSWSDLPT TNGAGAYP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g10140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507087.10.0dof zinc finger protein DOF5.7
TrEMBLA0A1S3UM581e-180A0A1S3UM58_VIGRR; dof zinc finger protein DOF5.7
STRINGXP_007155971.11e-153(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72193247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-16DNA binding with one finger 2.4