PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g10240.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 457aa    MW: 50309.1 Da    PI: 6.3713
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g10240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.86.8e-4271061100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC+++Cv+apyfp ++p++f++vh++FGasnv+kll++l+  +r+da++sl+yeAe r++dPvyG+vgvi+ lqq+l+q + el
  Vradi07g10240.1   7 PCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAETRLHDPVYGCVGVISLLQQRLRQIQMEL 100
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      +++k+e
  Vradi07g10240.1 101 QSAKKE 106
                      *99987 PP
2DUF260109.32.9e-342843831100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk++rr+C ++Cv+a +fpae+ ++fa+vh++FG  nv+++lk+++++ r+ ++++l+y+Aear+rdPv+G+vg+i++ ++ l  lk++l
  Vradi07g10240.1 284 PCAACKYQRRRCGSECVMASHFPAESIQRFAYVHHVFGGGNVSNILKSTSPDLRKWVARALAYQAEARVRDPVHGCVGLIWEQEETLGILKEKL 377
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      +++k+e
  Vradi07g10240.1 378 EKAKRE 383
                      *99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.026107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-417104IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089122.744283384IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-33284381IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSSLNSPCAA CKLLRRKCTQ ECVFAPYFPP DNPQRFECVH RVFGASNVSK LLNELSVAQR  60
DDAVKSLAYE AETRLHDPVY GCVGVISLLQ QRLRQIQMEL QSAKKELSTY VSPQTMQILL  120
ANPGMVPSAD IVVPPSHQPL FNHVGNNMAP QQILVGHGGG QTVVRDPQQQ DFQEAQQIAL  180
ATREQQQMFR NYEQKVLGGF EPSNGGFGAQ GELLSPLALG NFGNVGAYQM QQLGEQHLIE  240
SQLLLSPQQG QPHQQQQCES EDTKNVLDFS INSAVVEEVE GMTPCAACKY QRRRCGSECV  300
MASHFPAESI QRFAYVHHVF GGGNVSNILK STSPDLRKWV ARALAYQAEA RVRDPVHGCV  360
GLIWEQEETL GILKEKLEKA KRELAQYVGP DVVLKMIEQC SSDPHAKTVN LMAPLSAPAD  420
DFDLSSWDPF PAWESSSSRR LPSQADAKGK TIAPPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4353879127LOB family transfactor Ramosa2.1
5ly0_B2e-4353879127LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g10240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507993.11e-180LOB domain-containing protein 4
RefseqXP_014507994.11e-180LOB domain-containing protein 4
RefseqXP_022640205.11e-180LOB domain-containing protein 4
RefseqXP_022640206.11e-180LOB domain-containing protein 4
SwissprotQ9FKZ34e-55LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A1S3UPJ01e-178A0A1S3UPJ0_VIGRR; LOB domain-containing protein 4
STRINGXP_007155957.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4080522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-49ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]