PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g11160.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 233aa MW: 25487.2 Da PI: 8.4259

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g11160.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.3	7.8e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++Cvl+p++ ++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q Vradi07g11160.1 2 SCNGCRVLRKGCSESCVLRPCLqwietSEAQGHATVFVAKFFGRADLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQ 95 6*******************9998777889********************************************************** PP DUF260 90 lkaelall 97 +++e++l+ Vradi07g11160.1 96 AAVETVLR 103 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.901	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCVLR PCLQWIETSE AQGHATVFVA KFFGRADLMS FISNVPENQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELMGLSSPA 120 SAVDETSEVA CSDIWRIRDP NPTCGLANTR SHNRVSSASK RKRLEEPAKL QAAPNLDLRL 180 TPIFLQKKVE NRRPVSPSMT SEESGTTTAC LESKFGDQWG YSGDRKVLNL FI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g11160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014507187.1	1e-172	LOB domain-containing protein 37
Swissprot	Q9SN23	1e-83	LBD38_ARATH; LOB domain-containing protein 38
Swissprot	Q9SZE8	1e-83	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A1S3UMF7	1e-171	A0A1S3UMF7_VIGRR; LOB domain-containing protein 37
STRING	XP_007155842.1	1e-164	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	4e-86	LOB domain-containing protein 39