PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g11630.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 382aa    MW: 42087.1 Da    PI: 4.7629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g11630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11203248454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+L
  Vradi07g11630.1 203 DHIMAERKRREKLSQSFIALAALVPGL-----KKMDKASVLGDAIKYVKDL 248
                      699************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9203248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16203265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-16204265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.72E-13204253No hitNo description
SMARTSM003531.5E-13205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMEESNKPMD DASAPSWLSD LDMDDYNLFP DDCALNLNLF DDQEFLPHDI ASALEEQTWS  60
LQQSLSSECP SKTVSNSSTD ETSFDFERPA KLLKTTSSSC CNSDSSTITN NLSPKLSPST  120
SFSSFQSHIL SFDNPNSSPP ITTTTTHFYG FDLNPTQNEM VSVSLPQLTK SCFPDETPKG  180
SSKNHNFETK SSHGKRSPAH AQDHIMAERK RREKLSQSFI ALAALVPGLK KMDKASVLGD  240
AIKYVKDLKE RLAVLEEQSK KTREESVVVL NKPDLSGDDD SSSCDESIGA DSVSDTQFEV  300
ESRVSGKEML LRIHCLKQKG LLVKLLAEIQ RNNLLVINSS ILPFGDSILD ITIVAQMGEN  360
YNLTTKELVK NLRVSANKVV S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-13203265870Transcription factor MYC2
5gnj_B7e-13203265870Transcription factor MYC2
5gnj_E7e-13203265870Transcription factor MYC2
5gnj_F7e-13203265870Transcription factor MYC2
5gnj_G7e-13203265870Transcription factor MYC2
5gnj_I7e-13203265870Transcription factor MYC2
5gnj_M7e-13203265870Transcription factor MYC2
5gnj_N7e-13203265870Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212ERKRRE
2208213RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g11630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507581.10.0transcription factor bHLH18
TrEMBLA0A1S3UNE00.0A0A1S3UNE0_VIGRR; transcription factor bHLH18
STRINGXP_007155779.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-48bHLH family protein