PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g11710.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LSD
Protein Properties Length: 153aa    MW: 16320 Da    PI: 8.2124
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g11710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.18.2e-152852125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL+YP GA+sV+Ca+C++V
  Vradi07g11710.1 28 CSGCRNLLMYPVGATSVCCAVCNAV 52
                     ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.5E-142555IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-112852IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPVPLAPYPA PPAPYTPPAN GAQSQLVCSG CRNLLMYPVG ATSVCCAVCN AVTAVPPPAK  60
SQALMCDRHR NGPVSLRRLP YSTHVHPWSD KCAMFLLSHG QSSVGSKSGG TCQLWELQDA  120
AHVPIWSKIR EMCSLQFCDI SWGQCNLLSL PS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g11710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904151e-93BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155769.14e-42hypothetical protein PHAVU_003G230100g
TrEMBLV7CEH51e-40V7CEH5_PHAVU; Uncharacterized protein
STRINGXP_008799372.14e-41(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2811833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-08lsd one like 1