PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g12530.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 259aa    MW: 28794.4 Da    PI: 9.4876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g12530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00062156178123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C+ Cgk F+++  L +H   +
  Vradi07g12530.1 156 YLCHTCGKAFRSSRALGSHKTIC 178
                      66*****************8774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.9E-4156177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035565156176IPR015880Zinc finger, C2H2-like
PfamPF139120.0033156175IPR007087Zinc finger, C2H2
SuperFamilySSF576675.31E-7156219No hitNo description
PROSITE profilePS501579.099156177IPR007087Zinc finger, C2H2
PfamPF139123.3E-12196220IPR007087Zinc finger, C2H2
SMARTSM003550.2197219IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598197219IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKAHLASLPL PPKPQTLTHS SSFTYSSSSD SQQHHLKEQD SLSYALRENP KKTFRVTDPE  60
DRESETESKN PTRQRSKRNR KSAMLKLSFV VSTPLITEPE PVSSVSDTSP EEDVAMSLMM  120
LSRDTWNVVT NAGPPQRSKR RCTGSETKLK KLRGKYLCHT CGKAFRSSRA LGSHKTICCR  180
QVEAQNQNND NNSIKVFECP FCYKVFGSGQ ALGGHKRSHL IPSSSSTVND SLKFKQTFID  240
LNMPAQPEED DLSVVSDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277RQRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g12530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507870.10.0zinc finger protein ZAT4
TrEMBLA0A1S3UPF00.0A0A1S3UPF0_VIGRR; zinc finger protein ZAT4
STRINGXP_007155662.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-37C2H2-like zinc finger protein