PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g13200.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22972.1 Da    PI: 8.0559
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g13200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.81.8e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien++ rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss
  Vradi07g13200.1  9 KRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSS 59
                     79***********************************************96 PP
2K-box61.63.1e-21921601482
            K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                      ++ l+     + + ie L+++ R+llG++L+++sl eL+qLe+qLe+sl+kiR++Kn++++eqie+l++
  Vradi07g13200.1  92 TQILKDGGMSMTETIEHLENSRRKLLGDELDTCSLDELRQLENQLERSLEKIRARKNQMFTEQIEKLKE 160
                      5556666668999****************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
CDDcd002651.44E-35376No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-31323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-30377IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.27892189IPR002487Transcription factor, K-box
PfamPF014861.4E-1993161IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVRGKTQMKR IENETSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFST RGRLYEFSSS  60
TSRCSSINKT VERYQKKIKD FGDSHKGIHE NTQILKDGGM SMTETIEHLE NSRRKLLGDE  120
LDTCSLDELR QLENQLERSL EKIRARKNQM FTEQIEKLKE EYLIERGRYL SDEDLEVVRE  180
KKEEEVETEL FIGRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-18195185Myocyte-specific enhancer factor 2B
1tqe_Q8e-18195185Myocyte-specific enhancer factor 2B
1tqe_R8e-18195185Myocyte-specific enhancer factor 2B
1tqe_S8e-18195185Myocyte-specific enhancer factor 2B
5f28_A1e-17160160MEF2C
5f28_B1e-17160160MEF2C
5f28_C1e-17160160MEF2C
5f28_D1e-17160160MEF2C
6byy_A1e-17195185MEF2 CHIMERA
6byy_B1e-17195185MEF2 CHIMERA
6byy_C1e-17195185MEF2 CHIMERA
6byy_D1e-17195185MEF2 CHIMERA
6c9l_A8e-18195185Myocyte-specific enhancer factor 2B
6c9l_B8e-18195185Myocyte-specific enhancer factor 2B
6c9l_C8e-18195185Myocyte-specific enhancer factor 2B
6c9l_D8e-18195185Myocyte-specific enhancer factor 2B
6c9l_E8e-18195185Myocyte-specific enhancer factor 2B
6c9l_F8e-18195185Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g13200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507710.11e-117agamous-like MADS-box protein AGL14 isoform X2
SwissprotO827433e-66AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A0S3R6491e-116A0A0S3R649_PHAAN; Uncharacterized protein
STRINGGLYMA05G03660.81e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-68AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]