PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g13290.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 248aa    MW: 27534.7 Da    PI: 5.3873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g13290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.6e-2060111155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr++k +++Wv+e+r+p   + k++r++lg++ tae+Aa+a++ a+++l+g
  Vradi07g13290.1  60 PVYRGVRQRK-NNKWVCEVRVP---NdKSTRIWLGTYPTAEMAARAHDVAALALRG 111
                      68*******9.8*********9...6678*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1460111IPR001471AP2/ERF domain
PROSITE profilePS5103222.07661119IPR001471AP2/ERF domain
SMARTSM003801.5E-2661125IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2161121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-3161121IPR001471AP2/ERF domain
CDDcd000181.38E-2862121No hitNo description
PRINTSPR003675.1E-86273IPR001471AP2/ERF domain
PRINTSPR003675.1E-885101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MNVNSTQSLP HSNNASYFSS SPETTSSLNA LHSDDELHAL ASARPKRRAG RRIFKETRHP  60
VYRGVRQRKN NKWVCEVRVP NDKSTRIWLG TYPTAEMAAR AHDVAALALR GKSACLNFAD  120
SAWRLPLPAS TNAKEIRRVA AEAVVAIAAE DSCVEQSENE NVNAVVDCKV SSFGVCTDED  180
GNSSKVLREF GDLDEITVPV TLGFDDMHEW LQNLADEPLR SPSFLTYVRD WTCLEDDVEV  240
SLWSFSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g13290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508100.10.0dehydration-responsive element-binding protein 1E
TrEMBLA0A1S3UQ280.0A0A1S3UQ28_VIGRR; dehydration-responsive element-binding protein 1E
STRINGXP_007155567.11e-141(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-39ERF family protein