PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g13680.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 98aa    MW: 10892.3 Da    PI: 4.7362
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g13680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS704.7e-2247866140
             GRAS  66 psetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp 140
                      p+++++++ +e + ++k +++++   k++hlt Nq Ilea+e  + +Hi+Dfdi qG QW+aLlqa+a+ +++ p
  Vradi07g13680.1   4 PKSAKTTTLEELMLSYKSLNDACHNSKLAHLTVNQDILEATEDTSNIHILDFDIIQGNQWVALLQAFATHSHSRP 78 
                      55566677999999******************************************************9987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.92197IPR005202Transcription factor GRAS
PfamPF035141.6E-19478IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MGEPKSAKTT TLEELMLSYK SLNDACHNSK LAHLTVNQDI LEATEDTSNI HILDFDIIQG  60
NQWVALLQAF ATHSHSRPRP QQLCIDPDEA LAMNFML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-2127860139GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g13680.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522771.15e-34scarecrow-like protein 4 isoform X2
SwissprotA0A024B7I08e-24SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1S3VWK41e-32A0A1S3VWK4_VIGRR; scarecrow-like protein 4 isoform X2
STRINGXP_004505608.14e-27(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.12e-24GRAS family protein